OBO Foundry dashboard analysis¶

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/tmp/ipykernel_679/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    6
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 6 85164.333333 148703.823383 1195.0 3524.75 9724.0 87314.25 375707.0
EquivalentClasses 6 2905.000000 3362.060321 7.0 170.75 1713.0 5357.50 7768.0
Declaration 6 10013.833333 13013.544074 300.0 920.25 3808.5 15984.75 32165.0
SubClassOf 5 11598.833333 19094.409050 0.0 207.50 787.0 16186.50 46685.0
SubAnnotationPropertyOf 4 8.333333 14.841384 0.0 0.25 2.0 6.75 38.0
SubPropertyChainOf 4 7.500000 9.813256 0.0 0.25 4.0 10.75 25.0
SymmetricObjectProperty 3 1.166667 1.471960 0.0 0.00 0.5 2.50 3.0
SubObjectPropertyOf 3 23.666667 37.146557 0.0 0.00 2.0 38.50 88.0
DisjointClasses 3 15.000000 31.003226 0.0 0.00 3.0 6.00 78.0
ObjectPropertyRange 2 5.666667 10.132456 0.0 0.00 0.0 6.75 25.0
TransitiveObjectProperty 2 1.333333 2.422120 0.0 0.00 0.0 1.50 6.0
InverseObjectProperties 2 5.000000 8.366600 0.0 0.00 0.0 7.50 20.0
ObjectPropertyDomain 2 8.333333 13.647955 0.0 0.00 0.0 13.50 32.0
DataPropertyRange 2 1.000000 1.549193 0.0 0.00 0.0 2.25 3.0
DataPropertyDomain 2 2.000000 4.000000 0.0 0.00 0.0 1.50 10.0
ClassAssertion 2 3.833333 8.447879 0.0 0.00 0.0 1.50 21.0
AnnotationPropertyRangeOf 2 0.666667 1.032796 0.0 0.00 0.0 1.50 2.0
DifferentIndividuals 1 0.333333 0.816497 0.0 0.00 0.0 0.00 2.0
SubDataPropertyOf 1 2.500000 6.123724 0.0 0.00 0.0 0.00 15.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 6 43464.666667 61835.054937 513.0 2562.25 10367.0 70242.00 149380.0
ObjectIntersectionOf 6 3247.500000 3762.726392 1.0 204.00 1821.5 6547.00 8054.0
ObjectSomeValuesFrom 6 7343.833333 9709.212912 27.0 374.75 2204.0 14811.50 20849.0
ObjectUnionOf 4 14.000000 17.877360 0.0 1.75 10.5 14.75 48.0
DataSomeValuesFrom 2 0.500000 0.836660 0.0 0.00 0.0 0.75 2.0
ObjectExactCardinality 2 0.666667 1.211060 0.0 0.00 0.0 0.75 3.0
DataHasValue 1 0.666667 1.632993 0.0 0.00 0.0 0.00 4.0
ObjectAllValuesFrom 1 0.833333 2.041241 0.0 0.00 0.0 0.00 5.0
ObjectComplementOf 1 0.333333 0.816497 0.0 0.00 0.0 0.00 2.0
DataExactCardinality 1 0.166667 0.408248 0.0 0.00 0.0 0.00 1.0
ObjectOneOf 1 0.833333 2.041241 0.0 0.00 0.0 0.00 5.0

OBO Score (Experimental)

ontology score score_dash score_impact
2 hp 0.620 0.800 0.500
3 maxo 0.491 0.727 0.333
0 ecto 0.438 0.844 0.167
4 mondo 0.389 0.973 0.000
1 geno 0.363 0.907 0.000
5 sepio 0.187 0.467 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 6.0 0.414667 0.144009 0.187 0.36950 0.4135 0.47775 0.620
score_dash 6.0 0.786333 0.177995 0.467 0.74525 0.8220 0.89125 0.973
score_impact 6.0 0.166667 0.210766 0.000 0.00000 0.0835 0.29150 0.500

OBO dependency graph